- recipe bioconductor-geofastq
Downloads ENA Fastqs With GEO Accessions
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GEOfastq.html
- License:
MIT + file LICENSE
- Recipe:
GEOfastq is used to download fastq files from the European Nucleotide Archive (ENA) starting with an accession from the Gene Expression Omnibus (GEO). To do this, sample metadata is retrieved from GEO and the Sequence Read Archive (SRA). SRA run accessions are then used to construct FTP and aspera download links for fastq files generated by the ENA.
- package bioconductor-geofastq¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-geofastq
and update with:
conda update bioconductor-geofastq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-geofastq:<tag>
(see bioconductor-geofastq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-geofastq/README.html)