recipe bioconductor-geomxtools

NanoString GeoMx Tools

Homepage

https://bioconductor.org/packages/3.14/bioc/html/GeomxTools.html

License

MIT

Recipe

/bioconductor-geomxtools/meta.yaml

Tools for NanoString Technologies GeoMx Technology. Package provides functions for reading in DCC and PKC files based on an ExpressionSet derived object. Normalization and QC functions are also included.

package bioconductor-geomxtools

Versions

2.0.0-0,  1.0.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-nanostringnctools >=1.2.0,<1.3.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dplyr

• r-envstats

• r-lmertest

• r-outliers

• r-readxl

• r-reshape2

• r-rjson

Required By

• bioconductor-geodiff

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geomxtools

and update with:

conda update bioconductor-geomxtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geomxtools:<tag>

(see bioconductor-geomxtools/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-geomxtools/README.html)