recipe bioconductor-gesper

Estimates gene-specific phenotypes from off-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on-targeted and off-targeted genes, using a regularized linear regression model.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/gespeR.html

License

GPL-3

Recipe

/bioconductor-gesper/meta.yaml

package bioconductor-gesper

(downloads) docker_bioconductor-gesper

Versions

1.14.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biomart

>=2.38.0,<2.39.0

Depends bioconductor-cellhts2

>=2.46.0,<2.47.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-doparallel

Depends r-dplyr

Depends r-foreach

Depends r-ggplot2

Depends r-glmnet

Depends r-matrix

Depends r-reshape2

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gesper

and update with:

conda update bioconductor-gesper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gesper:<tag>

(see bioconductor-gesper/tags for valid values for <tag>)