recipe bioconductor-ggbio

Visualization tools for genomic data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ggbio.html

License:

Artistic-2.0

Recipe:

/bioconductor-ggbio/meta.yaml

Links:

biotools: ggbio

The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor data structures are supported, where appropriate. The package supports detailed views of particular genomic regions, as well as genome-wide overviews. Supported overviews include ideograms and grand linear views. High-level plots include sequence fragment length, edge-linked interval to data view, mismatch pileup, and several splicing summaries.

package bioconductor-ggbio

Versions:

1.46.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0, 

1.46.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.5-0,  1.26.0-0,  1.24.1-0,  1.22.0-0,  1.20.2-0,  1.18.5-0,  1.18.1-0,  1.18.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-annotationfilter >=1.22.0,<1.23.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-biovizbase >=1.46.0,<1.47.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-ensembldb >=2.22.0,<2.23.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-organismdbi >=1.40.0,<1.41.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-ggally

• r-ggplot2 >=1.0.0

• r-gridextra

• r-gtable

• r-hmisc

• r-reshape2

• r-rlang

• r-scales

Required By:

• bioconductor-intansv

• bioconductor-msgbsr

• bioconductor-r3cpet

• bioconductor-riboprofiling

• bioconductor-scruff

• bioconductor-reportingtools

• bioconductor-somaticsignatures

• r-nanopore

• bioconductor-genomicozone

• r-ggcoverage

• bioconductor-derfinderplot

• bioconductor-cafe

• bioconductor-flames

• circtools

• bioconductor-cageminer

• bioconductor-bobafit

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ggbio

and update with:

conda update bioconductor-ggbio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ggbio:<tag>

(see bioconductor-ggbio/tags for valid values for <tag>)

Download stats

Link to this page

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