- recipe bioconductor-ggcyto
Visualize Cytometry data with ggplot
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/ggcyto.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: ggcyto, doi: 10.1038/nmeth.3252
With the dedicated fortify method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.
- package bioconductor-ggcyto¶
-
- Versions:
1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.2-0
,1.10.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.2-0
,1.10.0-0
,1.8.2-0
,1.6.0-0
,1.4.1-0
,1.4.0-0
- Depends:
bioconductor-flowcore
>=2.6.0,<2.7.0
bioconductor-flowworkspace
>=4.6.0,<4.7.0
bioconductor-ncdfflow
>=2.40.0,<2.41.0
r-base
>=4.1,<4.2.0a0
r-ggplot2
>=3.3.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ggcyto
and update with:
conda update bioconductor-ggcyto
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ggcyto:<tag>
(see bioconductor-ggcyto/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ggcyto/README.html)