recipe bioconductor-ggspavis

Visualization functions for spatially resolved transcriptomics data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ggspavis.html

License

MIT + file LICENSE

Recipe

/bioconductor-ggspavis/meta.yaml

Visualization functions for spatially resolved transcriptomics datasets stored in SpatialExperiment format. Includes functions to create several types of plots for data from from spot-based (e.g. 10x Genomics Visium) and molecule-based (e.g. seqFISH) technological platforms.

package bioconductor-ggspavis

Versions

1.0.0-0

Depends

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-spatialexperiment >=1.4.0,<1.5.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-ggside

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ggspavis

and update with:

conda update bioconductor-ggspavis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ggspavis:<tag>

(see bioconductor-ggspavis/tags for valid values for <tag>)

Download stats

Link to this page

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