Package Recipe 'bioconductor-ggspavis'

recipe bioconductor-ggspavis

Visualization functions for spatially resolved transcriptomics data

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/ggspavis.html
License:: MIT + file LICENSE
Recipe:: /bioconductor-ggspavis/meta.yaml

Visualization functions for spatially resolved transcriptomics datasets stored in SpatialExperiment format. Includes functions to create several types of plots for data from from spot-based (e.g. 10x Genomics Visium) and molecule-based (e.g. seqFISH) technological platforms.

package bioconductor-ggspavis¶

Versions:

1.4.0-0, 1.0.0-0

Depends:

bioconductor-singlecellexperiment >=1.20.0,<1.21.0
bioconductor-spatialexperiment >=1.8.0,<1.9.0
bioconductor-summarizedexperiment >=1.28.0,<1.29.0
r-base >=4.2,<4.3.0a0
r-ggplot2
r-ggside

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ggspavis

and update with:

conda update bioconductor-ggspavis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ggspavis:<tag>

(see bioconductor-ggspavis/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ggspavis/README.html)