- recipe bioconductor-ggspavis
Visualization functions for spatially resolved transcriptomics data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/ggspavis.html
- License
MIT + file LICENSE
- Recipe
Visualization functions for spatially resolved transcriptomics datasets stored in SpatialExperiment format. Includes functions to create several types of plots for data from from spot-based (e.g. 10x Genomics Visium) and molecule-based (e.g. seqFISH) technological platforms.
- package bioconductor-ggspavis¶
-
- Versions
1.0.0-0
- Depends
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-spatialexperiment
>=1.4.0,<1.5.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ggspavis
and update with:
conda update bioconductor-ggspavis
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ggspavis:<tag>
(see bioconductor-ggspavis/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ggspavis/README.html)