recipe bioconductor-ggtree

an R package for visualization of tree and annotation data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ggtree.html

License:

Artistic-2.0

Recipe:

/bioconductor-ggtree/meta.yaml

Links:

biotools: ggtree, doi: 10.1111/2041-210X.12628

'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.

package bioconductor-ggtree

Versions:

3.6.0-0,  3.2.0-0,  3.0.1-0,  2.4.1-0,  2.4.0-0,  2.2.1-0,  2.0.0-0,  1.16.3-0,  1.16.0-0, 

3.6.0-0,  3.2.0-0,  3.0.1-0,  2.4.1-0,  2.4.0-0,  2.2.1-0,  2.0.0-0,  1.16.3-0,  1.16.0-0,  1.14.6-0,  1.14.4-0,  1.12.7-0,  1.10.0-0,  1.8.2-0,  1.4.20-0,  1.2.12-0

Depends:

• bioconductor-treeio >=1.22.0,<1.23.0

• r-ape

• r-aplot

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggfun >=0.0.6

• r-ggplot2 >=3.0.0

• r-magrittr

• r-purrr

• r-rlang

• r-scales

• r-tidyr

• r-tidytree >=0.3.9

• r-yulab.utils

Required By:

• bioconductor-philr

• bioconductor-ggtreedendro

• bioconductor-systempipetools

• bioconductor-lymphoseq

• r-fastbaps

• r-dowser

• bioconductor-ggtreeextra

• bioconductor-orthogene

• bioconductor-singlecelltk

• bioconductor-microbiomemarker

• bioconductor-lintind

• bioconductor-ggmsa

• coinfinder

• bioconductor-cardelino

• chewiesnake

• bioconductor-tanggle

• bioconductor-microbiotaprocess

• bioconductor-cogeqc

• bioconductor-miaviz

• bioconductor-treekor

• bioconductor-sitepath

• bioconductor-scbubbletree

• bioconductor-enrichplot

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ggtree

and update with:

conda update bioconductor-ggtree

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ggtree:<tag>

(see bioconductor-ggtree/tags for valid values for <tag>)

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