recipe bioconductor-girafe

Genome Intervals and Read Alignments for Functional Exploration

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/girafe.html

License:

Artistic-2.0

Recipe:

/bioconductor-girafe/meta.yaml

Links:

biotools: girafe

The package 'girafe' deals with the genome-level representation of aligned reads from next-generation sequencing data. It contains an object class for enabling a detailed description of genome intervals with aligned reads and functions for comparing, visualising, exporting and working with such intervals and the aligned reads. As such, the package interacts with and provides a link between the packages ShortRead, IRanges and genomeIntervals.

package bioconductor-girafe

Versions:

1.50.0-0,  1.46.0-2,  1.46.0-1,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0, 

1.50.0-0,  1.46.0-2,  1.46.0-1,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeintervals >=1.54.0,<1.55.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-shortread >=1.56.0,<1.57.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-intervals >=0.13.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-girafe

and update with:

conda update bioconductor-girafe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-girafe:<tag>

(see bioconductor-girafe/tags for valid values for <tag>)

Download stats

Link to this page

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