- recipe bioconductor-girafe
Genome Intervals and Read Alignments for Functional Exploration
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/girafe.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: girafe
The package 'girafe' deals with the genome-level representation of aligned reads from next-generation sequencing data. It contains an object class for enabling a detailed description of genome intervals with aligned reads and functions for comparing, visualising, exporting and working with such intervals and the aligned reads. As such, the package interacts with and provides a link between the packages ShortRead, IRanges and genomeIntervals.
- package bioconductor-girafe¶
-
- Versions:
1.50.0-0
,1.46.0-2
,1.46.0-1
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.50.0-0
,1.46.0-2
,1.46.0-1
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomeintervals
>=1.54.0,<1.55.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-shortread
>=1.56.0,<1.57.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-intervals
>=0.13.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-girafe
and update with:
conda update bioconductor-girafe
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-girafe:<tag>
(see bioconductor-girafe/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-girafe/README.html)