recipe bioconductor-globaltest

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

Homepage

https://bioconductor.org/packages/3.11/bioc/html/globaltest.html

License

GPL (>= 2)

Recipe

/bioconductor-globaltest/meta.yaml

Links

biotools: globaltest

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

package bioconductor-globaltest

Versions

5.42.0-0,  5.40.0-0,  5.38.0-1,  5.36.0-1,  5.36.0-0,  5.34.1-0,  5.32.0-0,  5.30.0-0

Depends

• bioconductor-annotate >=1.66.0,<1.67.0

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• r-base >=4.0,<4.1.0a0

• r-survival

Required By

• r-metaboanalyst

• bioconductor-champ

• bioconductor-globalancova

• bioconductor-biseq

• bioconductor-egsea

• bioconductor-sim

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-globaltest

and update with:

conda update bioconductor-globaltest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-globaltest:<tag>

(see bioconductor-globaltest/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-globaltest/README.html)