-
recipe
bioconductor-gnet2
Constructing gene regulatory networks from expression data through functional module inference
- Homepage
- License
Apache License 2.0
- Recipe
Cluster genes to functional groups with E-M process. Iteratively perform TF assigning and Gene assigning, until the assignment of genes did not change, or max number of iterations is reached.
-
package
bioconductor-gnet2
¶ -
- Versions
1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-gnet2
and update with:
conda update bioconductor-gnet2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-gnet2:<tag>
(see bioconductor-gnet2/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-gnet2/README.html)