recipe bioconductor-gnet2

Constructing gene regulatory networks from expression data through functional module inference

Homepage

https://bioconductor.org/packages/3.11/bioc/html/GNET2.html

License

Apache License 2.0

Recipe

/bioconductor-gnet2/meta.yaml

Cluster genes to functional groups with E-M process. Iteratively perform TF assigning and Gene assigning, until the assignment of genes did not change, or max number of iterations is reached.

package bioconductor-gnet2

Versions

1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-diagrammer

• r-dplyr

• r-ggplot2

• r-igraph

• r-matrixstats

• r-rcpp

• r-reshape2

• r-xgboost

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gnet2

and update with:

conda update bioconductor-gnet2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gnet2:<tag>

(see bioconductor-gnet2/tags for valid values for <tag>)

Link to this page

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