recipe bioconductor-goseq

Gene Ontology analyser for RNA-seq and other length biased data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/goseq.html

License

LGPL (>= 2)

Recipe

/bioconductor-goseq/meta.yaml

Links

biotools: goseq

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

package bioconductor-goseq

Versions

1.40.0-0, 1.38.0-2, 1.38.0-1, 1.36.0-1, 1.34.1-0, 1.34.0-0, 1.32.0-0, 1.30.0-0, 1.28.0-0, 1.26.0-0, 1.22.0-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genelendatabase >=1.24.0,<1.25.0

• bioconductor-go.db >=3.11.0,<3.12.0

• r-base >=4.0,<4.1.0a0

• r-biasedurn

• r-mgcv

Required By

• bioconductor-champ

• bioconductor-smite

• bioconductor-rgsepd

• bioconductor-pathwaysplice

• bioconductor-ideal

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-goseq

and update with:

conda update bioconductor-goseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-goseq:<tag>

(see bioconductor-goseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-goseq/README.html)