recipe bioconductor-goseq

Gene Ontology analyser for RNA-seq and other length biased data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/goseq.html

License

LGPL (>= 2)

Recipe

/bioconductor-goseq/meta.yaml

Links

biotools: goseq

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

package bioconductor-goseq

Versions

1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-2,  1.38.0-1,  1.36.0-1,  1.34.1-0,  1.34.0-0, 

1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-2,  1.38.0-1,  1.36.0-1,  1.34.1-0,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0

Depends

• bioconductor-annotationdbi >=1.54.0,<1.55.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-genelendatabase >=1.28.0,<1.29.0

• bioconductor-go.db >=3.13.0,<3.14.0

• r-base >=4.1,<4.2.0a0

• r-biasedurn

• r-mgcv

Required By

• bioconductor-ideal

• trinity

• bioconductor-champ

• bioconductor-smite

• bioconductor-rgsepd

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-goseq

and update with:

conda update bioconductor-goseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-goseq:<tag>

(see bioconductor-goseq/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-goseq/README.html)