recipe bioconductor-gothic

This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GOTHiC.html

License

GPL-3

Recipe

/bioconductor-gothic/meta.yaml

Links

biotools: gothic, doi: 10.1101/gr.185272.114

package bioconductor-gothic

(downloads) docker_bioconductor-gothic

Versions

1.18.0-0, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gothic

and update with:

conda update bioconductor-gothic

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gothic:<tag>

(see bioconductor-gothic/tags for valid values for <tag>)