bioconductor-gothic¶
This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.
| Home | http://bioconductor.org/packages/release/bioc/html/GOTHiC.html |
| Versions | 1.10.0 |
| License | GPL-3 |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gothic |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-gothic
and update with:
conda update bioconductor-gothic
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-gothic.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/bioconductor-gothic/README.html)
