recipe bioconductor-graphite

GRAPH Interaction from pathway Topological Environment

Homepage

https://bioconductor.org/packages/3.10/bioc/html/graphite.html

License

AGPL-3

Recipe

/bioconductor-graphite/meta.yaml

Links

biotools: graphite

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, PathBank, PharmGKB, Reactome and SMPDB databases.

package bioconductor-graphite

Versions

1.32.0-0, 1.30.0-1, 1.28.2-0, 1.28.1-0, 1.26.3-0, 1.24.0-0, 1.22.0-0, 1.16.0-0

Depends

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-graph >=1.64.0,<1.65.0

• r-base >=3.6,<3.7.0a0

• r-checkmate

• r-httr

• r-rappdirs

Required By

• bioconductor-enrichmentbrowser

• bioconductor-starbiotrek

• bioconductor-potra

• bioconductor-topaseq

• bioconductor-reactomepa

• bioconductor-mogsa

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-graphite

and update with:

conda update bioconductor-graphite

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-graphite:<tag>

(see bioconductor-graphite/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-graphite/README.html)