recipe bioconductor-graphite

GRAPH Interaction from pathway Topological Environment

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/graphite.html

License:

AGPL-3

Recipe:

/bioconductor-graphite/meta.yaml

Links:

biotools: graphite

Graph objects from pathway topology derived from KEGG, Panther, PathBank, PharmGKB, Reactome SMPDB and WikiPathways databases.

package bioconductor-graphite

Versions:

1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.2-0,  1.28.1-0, 

1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.2-0,  1.28.1-0,  1.26.3-0,  1.24.0-0,  1.22.0-0,  1.16.0-0

Depends:

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-graph >=1.72.0,<1.73.0

• r-base >=4.1,<4.2.0a0

• r-checkmate

• r-httr

• r-rappdirs

Required By:

• bioconductor-potra

• bioconductor-starbiotrek

• bioconductor-enrichmentbrowser

• bioconductor-dce

• bioconductor-multigsea

• bioconductor-reactomepa

• bioconductor-mogsa

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-graphite

and update with:

conda update bioconductor-graphite

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-graphite:<tag>

(see bioconductor-graphite/tags for valid values for <tag>)

Download stats

Link to this page

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