- recipe bioconductor-greylistchip
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GreyListChIP.html
- License:
Artistic-2.0
- Recipe:
Identify regions of ChIP experiments with high signal in the input, that lead to spurious peaks during peak calling. Remove reads aligning to these regions prior to peak calling, for cleaner ChIP analysis.
- package bioconductor-greylistchip¶
-
- Versions:
1.30.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
- Depends:
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-greylistchip
and update with:
conda update bioconductor-greylistchip
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-greylistchip:<tag>
(see bioconductor-greylistchip/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-greylistchip/README.html)