recipe bioconductor-grndata

Synthetic Expression Data for Gene Regulatory Network Inference

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/grndata.html

License:

GPL-3

Recipe:

/bioconductor-grndata/meta.yaml

Simulated expression data for five large Gene Regulatory Networks from different simulators

package bioconductor-grndata

versions:

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.29.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0, 

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.29.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.21.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-2,  1.16.0-1,  1.14.0-0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-grndata

and update with::

   mamba update bioconductor-grndata

To create a new environment, run:

mamba create --name myenvname bioconductor-grndata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-grndata:<tag>

(see `bioconductor-grndata/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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