recipe bioconductor-grohmm

GRO-seq Analysis Pipeline

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/groHMM.html

License:

GPL-3

Recipe:

/bioconductor-grohmm/meta.yaml

A pipeline for the analysis of GRO-seq data.

package bioconductor-grohmm

Versions:

1.32.0-0,  1.28.0-2,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0, 

1.32.0-0,  1.28.0-2,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-mass

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-grohmm

and update with:

conda update bioconductor-grohmm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-grohmm:<tag>

(see bioconductor-grohmm/tags for valid values for <tag>)

Download stats

Link to this page

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