recipe bioconductor-gsalightning

Fast Permutation-based Gene Set Analysis

Homepage

https://bioconductor.org/packages/3.12/bioc/html/GSALightning.html

License

GPL (>=2)

Recipe

/bioconductor-gsalightning/meta.yaml

Links

biotools: gsalightning, doi: 10.1093/bioinformatics/btw349

GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.

package bioconductor-gsalightning

Versions

1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-matrix

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gsalightning

and update with:

conda update bioconductor-gsalightning

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gsalightning:<tag>

(see bioconductor-gsalightning/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gsalightning/README.html)