recipe bioconductor-gsalightning

Fast Permutation-based Gene Set Analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/GSALightning.html

License

GPL (>=2)

Recipe

/bioconductor-gsalightning/meta.yaml

Links

biotools: gsalightning, doi: 10.1093/bioinformatics/btw349

GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.

package bioconductor-gsalightning

(downloads) docker_bioconductor-gsalightning

Versions

1.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gsalightning

and update with:

conda update bioconductor-gsalightning

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gsalightning:<tag>

(see bioconductor-gsalightning/tags for valid values for <tag>)