recipe bioconductor-gse62944

GEO accession data GSE62944 as a SummarizedExperiment

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/GSE62944.html

License

Artistic-2.0

Recipe

/bioconductor-gse62944/meta.yaml

TCGA processed RNA-Seq data for 9264 tumor and 741 normal samples across 24 cancer types and made them available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). GSE62944 data have been parsed into a SummarizedExperiment object available in ExperimentHub.

package bioconductor-gse62944

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-geoquery >=2.56.0,<2.57.0

• curl >=7.69.1,<8.0a0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gse62944

and update with:

conda update bioconductor-gse62944

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gse62944:<tag>

(see bioconductor-gse62944/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gse62944/README.html)