recipe bioconductor-gse62944

GEO accession data GSE62944 as a SummarizedExperiment

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/GSE62944.html

License

Artistic-2.0

Recipe

/bioconductor-gse62944/meta.yaml

TCGA processed RNA-Seq data for 9264 tumor and 741 normal samples across 24 cancer types and made them available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). GSE62944 data have been parsed into a SummarizedExperiment object available in ExperimentHub.

package bioconductor-gse62944

Versions

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-geoquery >=2.62.0,<2.63.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gse62944

and update with:

conda update bioconductor-gse62944

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gse62944:<tag>

(see bioconductor-gse62944/tags for valid values for <tag>)

Download stats

Link to this page

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