recipe bioconductor-gseabase

Gene set enrichment data structures and methods

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GSEABase.html

License:

Artistic-2.0

Recipe:

/bioconductor-gseabase/meta.yaml

Links:

biotools: gseabase, doi: 10.1038/nmeth.3252

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

package bioconductor-gseabase

Versions:

1.60.0-0,  1.56.0-0,  1.54.0-0,  1.52.1-0,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-1,  1.44.0-0, 

1.60.0-0,  1.56.0-0,  1.54.0-0,  1.52.1-0,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.2-0,  1.34.1-0,  1.32.0-0

Depends:

• bioconductor-annotate >=1.76.0,<1.77.0

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-graph >=1.76.0,<1.77.0

• r-base >=4.2,<4.3.0a0

• r-xml

Required By:

• bioconductor-cellhts2

• bioconductor-cpvsnp

• bioconductor-msigdb

• bioconductor-cepo

• bioconductor-promise

• bioconductor-slalom

• r-consensustme

• bioconductor-splinetimer

• bioconductor-migsa

• bioconductor-npgsea

• bioconductor-tfutils

• bioconductor-singlecelltk

• bioconductor-escape

• bioconductor-biocor

• bioconductor-gispa

• bioconductor-cancer

• bioconductor-gsri

• bioconductor-gmicr

• bioconductor-ccpromise

• bioconductor-mogsa

• bioconductor-mirsm

• bioconductor-reportingtools

• bioconductor-sctgif

• bioconductor-gsvadata

• bioconductor-signaturesearch

• bioconductor-categorycompare

• bioconductor-panomir

• bioconductor-category

• bioconductor-gep2pep

• r-shinyngs

• bioconductor-singscore

• bioconductor-agdex

• bioconductor-rcistarget

• bioconductor-sparrow

• bioconductor-aucell

• bioconductor-tissueenrich

• bioconductor-visse

• bioconductor-phenotest

• bioconductor-zenith

• bioconductor-bicare

• bioconductor-enrichmentbrowser

• bioconductor-oppar

• bioconductor-cosmosr

• r-xcell

• bioconductor-globalancova

• bioconductor-gsva

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-gseabase

and update with:

conda update bioconductor-gseabase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gseabase:<tag>

(see bioconductor-gseabase/tags for valid values for <tag>)

Download stats

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