-
recipe
bioconductor-gseabenchmarker¶ Reproducible GSEA Benchmarking
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/GSEABenchmarkeR.html
- License
Artistic-2.0
- Recipe
The GSEABenchmarkeR package implements an extendable framework for reproducible evaluation of set- and network-based methods for enrichment analysis of gene expression data. This includes support for the efficient execution of these methods on comprehensive real data compendia (microarray and RNA-seq) using parallel computation on standard workstations and institutional computer grids. Methods can then be assessed with respect to runtime, statistical significance, and relevance of the results for the phenotypes investigated.
-
package
bioconductor-gseabenchmarker¶ 
- Versions
1.6.0-1, 1.4.0-1, 1.2.0-0
- Depends
bioconductor-annotationdbi >=1.48.0,<1.49.0
bioconductor-annotationhub >=2.18.0,<2.19.0
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-biocfilecache >=1.10.0,<1.11.0
bioconductor-biocparallel >=1.20.0,<1.21.0
bioconductor-edger >=3.28.0,<3.29.0
bioconductor-enrichmentbrowser >=2.16.0,<2.17.0
bioconductor-experimenthub >=1.12.0,<1.13.0
bioconductor-keggandmetacoredzpathwaysgeo >=1.6.0,<1.7.0
bioconductor-keggdzpathwaysgeo >=1.24.0,<1.25.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-summarizedexperiment >=1.16.0,<1.17.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-gseabenchmarker
and update with:
conda update bioconductor-gseabenchmarker
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-gseabenchmarker:<tag>
(see bioconductor-gseabenchmarker/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-gseabenchmarker/README.html)