recipe bioconductor-gsri

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GSRI.html

License

GPL-3

Recipe

/bioconductor-gsri/meta.yaml

Links

biotools: gsri, doi: 10.1038/nmeth.3252

package bioconductor-gsri

Versions

2.30.0-0, 2.28.0-0, 2.26.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-genefilter >=1.64.0,<1.65.0

• bioconductor-gseabase >=1.44.0,<1.45.0

• bioconductor-les >=1.32.0,<1.33.0

• r-base >=3.5.1,<3.5.2.0a0

• r-fdrtool

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gsri

and update with:

conda update bioconductor-gsri

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gsri:<tag>

(see bioconductor-gsri/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gsri/README.html)