recipe bioconductor-gsri

Gene Set Regulation Index

Homepage

https://bioconductor.org/packages/3.14/bioc/html/GSRI.html

License

GPL-3

Recipe

/bioconductor-gsri/meta.yaml

Links

biotools: gsri, doi: 10.1038/nmeth.3252

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

package bioconductor-gsri

Versions

2.42.0-0,  2.40.0-0,  2.38.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-1,  2.30.0-0,  2.28.0-0, 

2.42.0-0,  2.40.0-0,  2.38.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-1,  2.30.0-0,  2.28.0-0,  2.26.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-genefilter >=1.76.0,<1.77.0

• bioconductor-gseabase >=1.56.0,<1.57.0

• bioconductor-les >=1.44.0,<1.45.0

• r-base >=4.1,<4.2.0a0

• r-fdrtool

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gsri

and update with:

conda update bioconductor-gsri

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gsri:<tag>

(see bioconductor-gsri/tags for valid values for <tag>)

Download stats

Link to this page

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