- recipe bioconductor-gwena
Pipeline for augmented co-expression analysis
- Homepage:
- License:
GPL-3
- Recipe:
The development of high-throughput sequencing led to increased use of co-expression analysis to go beyong single feature (i.e. gene) focus. We propose GWENA (Gene Whole co-Expression Network Analysis) , a tool designed to perform gene co-expression network analysis and explore the results in a single pipeline. It includes functional enrichment of modules of co-expressed genes, phenotypcal association, topological analysis and comparison of networks configuration between conditions.
- package bioconductor-gwena¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.1-0
,1.0.0-0
- Depends:
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-cluster
>=2.1.0
r-dplyr
>=0.8.3
r-dynamictreecut
>=1.63-1
r-ggplot2
>=3.1.1
r-gprofiler2
>=0.1.6
r-igraph
>=1.2.4.1
r-magrittr
>=1.5
r-matrixstats
>=0.55.0
r-netrep
>=1.2.1
r-purrr
>=0.3.3
r-rcolorbrewer
>=1.1-2
r-rlist
>=0.4.6.1
r-stringr
>=1.4.0
r-tibble
>=2.1.1
r-tidyr
>=1.0.0
r-wgcna
>=1.67
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-gwena
and update with:
conda update bioconductor-gwena
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-gwena:<tag>
(see bioconductor-gwena/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
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