recipe bioconductor-harman

Harman is a PCA and constrained optimisation based technique that maximises the removal of batch effects from datasets, with the constraint that the probability of overcorrection (i.e. removing genuine biological signal along with batch noise) is kept to a fraction which is set by the end-user.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Harman.html

License

GPL-3 + file LICENCE

Recipe

/bioconductor-harman/meta.yaml

Links

biotools: harman

package bioconductor-harman

(downloads) docker_bioconductor-harman

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends

  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • r-base >=3.5.1,<3.5.2.0a0

  • r-rcpp >=0.11.2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-harman

and update with:

conda update bioconductor-harman

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-harman:<tag>

(see bioconductor-harman/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-harman/README.html)