- recipe bioconductor-harman
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/Harman.html
- License:
GPL-3 + file LICENCE
- Recipe:
- Links:
biotools: harman
Harman is a PCA and constrained optimisation based technique that maximises the removal of batch effects from datasets, with the constraint that the probability of overcorrection (i.e. removing genuine biological signal along with batch noise) is kept to a fraction which is set by the end-user.
- package bioconductor-harman¶
-
- Versions:
1.26.0-0
,1.22.0-2
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.26.0-0
,1.22.0-2
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-harman
and update with:
conda update bioconductor-harman
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-harman:<tag>
(see bioconductor-harman/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-harman/README.html)