recipe bioconductor-harmonizedtcgadata

Processed Harmonized TCGA Data of Five Selected Cancer Types

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/HarmonizedTCGAData.html

License:

GPL-3

Recipe:

/bioconductor-harmonizedtcgadata/meta.yaml

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

package bioconductor-harmonizedtcgadata

(downloads) docker_bioconductor-harmonizedtcgadata

versions:
1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-experimenthub:

>=2.14.0,<2.15.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-harmonizedtcgadata

and update with::

   mamba update bioconductor-harmonizedtcgadata

To create a new environment, run:

mamba create --name myenvname bioconductor-harmonizedtcgadata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-harmonizedtcgadata:<tag>

(see `bioconductor-harmonizedtcgadata/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-harmonizedtcgadata/README.html)