Package Recipe 'bioconductor-hca'

recipe bioconductor-hca

Exploring the Human Cell Atlas Data Coordinating Platform

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/hca.html
License:: MIT + file LICENSE
Recipe:: /bioconductor-hca/meta.yaml

This package provides users with the ability to query the Human Cell Atlas data repository for single-cell experiment data. The `projects()`, `files()`, `samples()` and `bundles()` functions retrieve summary information on each of these indexes; corresponding `*_details()` are available for individual entries of each index. File-based resources can be downloaded using `files_download()`. Advanced use of the package allows the user to page through large result sets, and to flexibly query the 'list-of-lists' structure representing query responses.

package bioconductor-hca¶

Versions:

1.6.0-0, 1.2.0-0, 1.0.0-0

Depends:

bioconductor-biocfilecache >=2.6.0,<2.7.0
r-base >=4.2,<4.3.0a0
r-digest
r-dplyr
r-dt
r-httr
r-jsonlite
r-miniui
r-readr
r-shiny
r-tibble
r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-hca

and update with:

conda update bioconductor-hca

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hca:<tag>

(see bioconductor-hca/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hca/README.html)