recipe bioconductor-hca

Exploring the Human Cell Atlas Data Coordinating Platform

Homepage

https://bioconductor.org/packages/3.14/bioc/html/hca.html

License

MIT + file LICENSE

Recipe

/bioconductor-hca/meta.yaml

This package provides users with the ability to query the Human Cell Atlas data repository for single-cell experiment data. The `projects()`, `files()`, `samples()` and `bundles()` functions retrieve summary information on each of these indexes; corresponding `*_details()` are available for individual entries of each index. File-based resources can be downloaded using `files_download()`. Advanced use of the package allows the user to page through large result sets, and to flexibly query the 'list-of-lists' structure representing query responses.

package bioconductor-hca

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• r-base >=4.1,<4.2.0a0

• r-digest

• r-dplyr

• r-httr

• r-jsonlite

• r-readr

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hca

and update with:

conda update bioconductor-hca

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hca:<tag>

(see bioconductor-hca/tags for valid values for <tag>)

Download stats

Link to this page

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