recipe bioconductor-hd2013sgi

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/HD2013SGI.html

License

Artistic-2.0

Recipe

/bioconductor-hd2013sgi/meta.yaml

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

package bioconductor-hd2013sgi

Versions

1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0

Depends

• bioconductor-ebimage >=4.36.0,<4.37.0

• bioconductor-geneplotter >=1.72.0,<1.73.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-splots >=1.60.0,<1.61.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

• r-gplots

• r-lsd

• r-rcolorbrewer

• r-vcd

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hd2013sgi

and update with:

conda update bioconductor-hd2013sgi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hd2013sgi:<tag>

(see bioconductor-hd2013sgi/tags for valid values for <tag>)

Download stats

Link to this page

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