- recipe bioconductor-hd2013sgi
Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping
- Homepage
https://bioconductor.org/packages/3.14/data/experiment/html/HD2013SGI.html
- License
Artistic-2.0
- Recipe
This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.
- package bioconductor-hd2013sgi¶
-
- Versions
1.34.0-0
,1.32.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.22.0-0
- Depends
bioconductor-ebimage
>=4.36.0,<4.37.0
bioconductor-geneplotter
>=1.72.0,<1.73.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-splots
>=1.60.0,<1.61.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-hd2013sgi
and update with:
conda update bioconductor-hd2013sgi
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-hd2013sgi:<tag>
(see bioconductor-hd2013sgi/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-hd2013sgi/README.html)