recipe bioconductor-hdo.db

A set of annotation maps describing the entire Human Disease Ontology

Homepage:

https://bioconductor.org/packages/3.20/data/annotation/html/HDO.db.html

License:

Artistic-2.0

Recipe:

/bioconductor-hdo.db/meta.yaml

A set of annotation maps describing the entire Human Disease Ontology assembled using data from DO. Its annotation data comes from https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology.

package bioconductor-hdo.db

versions:

1.0.0-0,  0.99.1-2,  0.99.1-1,  0.99.1-0

depends bioconductor-annotationdbi:

>=1.68.0,<1.69.0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

depends r-dbi:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-hdo.db

and update with::

   mamba update bioconductor-hdo.db

To create a new environment, run:

mamba create --name myenvname bioconductor-hdo.db

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-hdo.db:<tag>

(see `bioconductor-hdo.db/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hdo.db/README.html)