recipe bioconductor-hdxmsqc

An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/hdxmsqc.html

License:

file LICENSE

Recipe:

/bioconductor-hdxmsqc/meta.yaml

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

package bioconductor-hdxmsqc

versions:

1.2.0-0

depends bioconductor-biocstyle:

>=2.34.0,<2.35.0

depends bioconductor-mscoreutils:

>=1.18.0,<1.19.0

depends bioconductor-qfeatures:

>=1.16.0,<1.17.0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends bioconductor-spectra:

>=1.16.0,<1.17.0

depends r-base:

>=4.4,<4.5.0a0

depends r-dplyr:

depends r-ggplot2:

depends r-knitr:

depends r-tidyr:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-hdxmsqc

and update with::

   mamba update bioconductor-hdxmsqc

To create a new environment, run:

mamba create --name myenvname bioconductor-hdxmsqc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-hdxmsqc:<tag>

(see `bioconductor-hdxmsqc/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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