recipe bioconductor-healthycontrolspresencechecker

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/healthyControlsPresenceChecker.html

License:

GPL-3

Recipe:

/bioconductor-healthycontrolspresencechecker/meta.yaml

A function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

package bioconductor-healthycontrolspresencechecker

Versions:

1.2.0-0

Depends:

• bioconductor-data-packages >=20221109

• bioconductor-geoquery >=2.66.0,<2.67.0

• curl

• r-base >=4.2,<4.3.0a0

• r-geneexpressionfromgeo

• r-magrittr

• r-xml2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-healthycontrolspresencechecker

and update with:

conda update bioconductor-healthycontrolspresencechecker

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-healthycontrolspresencechecker:<tag>

(see bioconductor-healthycontrolspresencechecker/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-healthycontrolspresencechecker/README.html)