- recipe bioconductor-healthycontrolspresencechecker
Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/healthyControlsPresenceChecker.html
- License:
GPL-3
- Recipe:
A function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.
- package bioconductor-healthycontrolspresencechecker¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-data-packages
>=20221109
bioconductor-geoquery
>=2.66.0,<2.67.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-healthycontrolspresencechecker
and update with:
conda update bioconductor-healthycontrolspresencechecker
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-healthycontrolspresencechecker:<tag>
(see bioconductor-healthycontrolspresencechecker/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-healthycontrolspresencechecker/README.html)