recipe bioconductor-hicdoc

A/B compartment detection and differential analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/HiCDOC.html

License:

LGPL (>= 3)

Recipe:

/bioconductor-hicdoc/meta.yaml

HiCDOC normalizes intrachromosomal Hi-C matrices, uses unsupervised learning to predict A/B compartments from multiple replicates, and detects significant compartment changes between experiment conditions. It provides a collection of functions assembled into a pipeline to filter and normalize the data, predict the compartments and visualize the results. It accepts several type of data: tabular `.tsv` files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files.

package bioconductor-hicdoc

(downloads) docker_bioconductor-hicdoc

Versions:

1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-hicdoc

and update with:

conda update bioconductor-hicdoc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hicdoc:<tag>

(see bioconductor-hicdoc/tags for valid values for <tag>)

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