recipe bioconductor-hicontacts

HiContacts: R interface to cool files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/HiContacts.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-hicontacts/meta.yaml

HiContacts: R interface to (m)cool files and other Hi-C processed file formats. HiContacts provides a collection of tools to analyse and visualize Hi-C datasets. It can import data from pairs or (m)cool files.

package bioconductor-hicontacts

Versions:

1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicinteractions >=1.32.0,<1.33.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-hicontactsdata >=1.0.0,<1.1.0

• bioconductor-interactionset >=1.26.0,<1.27.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2

• r-ggrastr

• r-glue

• r-matrix

• r-reticulate

• r-scales

• r-stringr

• r-tibble

• r-tidyr

• r-vroom

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-hicontacts

and update with:

conda update bioconductor-hicontacts

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hicontacts:<tag>

(see bioconductor-hicontacts/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hicontacts/README.html)