- recipe bioconductor-hicontacts
HiContacts: R interface to cool files
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/HiContacts.html
- License:
MIT + file LICENSE
- Recipe:
HiContacts: R interface to (m)cool files and other Hi-C processed file formats. HiContacts provides a collection of tools to analyse and visualize Hi-C datasets. It can import data from pairs or (m)cool files.
- package bioconductor-hicontacts¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicinteractions
>=1.32.0,<1.33.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-hicontactsdata
>=1.0.0,<1.1.0
bioconductor-interactionset
>=1.26.0,<1.27.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rhdf5
>=2.42.0,<2.43.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-hicontacts
and update with:
conda update bioconductor-hicontacts
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-hicontacts:<tag>
(see bioconductor-hicontacts/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-hicontacts/README.html)