recipe bioconductor-hicontactsdata

HiContacts companion data package

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/HiContactsData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-hicontactsdata/meta.yaml

Provides a collection of Hi-C files (pairs and (m)cool). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

package bioconductor-hicontactsdata

Versions:

1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-hicontacts

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-hicontactsdata

and update with:

conda update bioconductor-hicontactsdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hicontactsdata:<tag>

(see bioconductor-hicontactsdata/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hicontactsdata/README.html)