recipe bioconductor-hiiragi2013

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/Hiiragi2013.html

License

Artistic-2.0

Recipe

/bioconductor-hiiragi2013/meta.yaml

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper "Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages" by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881."

package bioconductor-hiiragi2013

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-genefilter >=1.70.0,<1.71.0

• bioconductor-geneplotter >=1.66.0,<1.67.0

• bioconductor-keggrest >=1.28.0,<1.29.0

• bioconductor-mouse4302.db >=3.2.0,<3.3.0

• curl >=7.69.1,<8.0a0

• r-base >=4.0,<4.1.0a0

• r-boot

• r-clue

• r-cluster

• r-gplots

• r-gtools

• r-lattice

• r-latticeextra

• r-mass

• r-rcolorbrewer

• r-xtable

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hiiragi2013

and update with:

conda update bioconductor-hiiragi2013

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hiiragi2013:<tag>

(see bioconductor-hiiragi2013/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hiiragi2013/README.html)