- recipe bioconductor-hippo
Heterogeneity-Induced Pre-Processing tOol
- Homepage:
- License:
GPL (>=2)
- Recipe:
For scRNA-seq data, it selects features and clusters the cells simultaneously for single-cell UMI data. It has a novel feature selection method using the zero inflation instead of gene variance, and computationally faster than other existing methods since it only relies on PCA+Kmeans rather than graph-clustering or consensus clustering.
- package bioconductor-hippo¶
-
- Versions:
1.10.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.1.0-0
,1.0.0-0
- Depends:
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-hippo
and update with:
conda update bioconductor-hippo
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-hippo:<tag>
(see bioconductor-hippo/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-hippo/README.html)