recipe bioconductor-hitc

High Throughput Chromosome Conformation Capture analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/HiTC.html

License:

Artistic-2.0

Recipe:

/bioconductor-hitc/meta.yaml

Links:

biotools: hitc

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.

package bioconductor-hitc

Versions:

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0, 

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• r-base >=4.2,<4.3.0a0

• r-matrix

• r-rcolorbrewer

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-hitc

and update with:

conda update bioconductor-hitc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hitc:<tag>

(see bioconductor-hitc/tags for valid values for <tag>)

Download stats

Link to this page

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