recipe bioconductor-hmp16sdata

16S rRNA Sequencing Data from the Human Microbiome Project

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/HMP16SData.html

License

Artistic-2.0

Recipe

/bioconductor-hmp16sdata/meta.yaml

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

package bioconductor-hmp16sdata

Versions

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.1-0,  1.2.0-0

Depends

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-assertthat

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-kableextra

• r-knitr

• r-magrittr

• r-readr

• r-stringr

• r-tibble

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hmp16sdata

and update with:

conda update bioconductor-hmp16sdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hmp16sdata:<tag>

(see bioconductor-hmp16sdata/tags for valid values for <tag>)

Download stats

Link to this page

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