recipe bioconductor-hmp16sdata

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/HMP16SData.html

License

Artistic-2.0

Recipe

/bioconductor-hmp16sdata/meta.yaml

package bioconductor-hmp16sdata

Versions

1.2.0-0

Depends

• bioconductor-annotationhub >=2.14.0,<2.15.0

• bioconductor-experimenthub >=1.8.0,<1.9.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• r-assertthat

• r-base >=3.5.1,<3.5.2.0a0

• r-dplyr

• r-kableextra

• r-knitr

• r-magrittr

• r-readr

• r-tibble

• wget

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hmp16sdata

and update with:

conda update bioconductor-hmp16sdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hmp16sdata:<tag>

(see bioconductor-hmp16sdata/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hmp16sdata/README.html)