- recipe bioconductor-hmp16sdata
16S rRNA Sequencing Data from the Human Microbiome Project
- Homepage
https://bioconductor.org/packages/3.14/data/experiment/html/HMP16SData.html
- License
Artistic-2.0
- Recipe
HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.
- package bioconductor-hmp16sdata¶
-
- Versions
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.1-0
,1.2.0-0
- Depends
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-experimenthub
>=2.2.0,<2.3.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-hmp16sdata
and update with:
conda update bioconductor-hmp16sdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-hmp16sdata:<tag>
(see bioconductor-hmp16sdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-hmp16sdata/README.html)