recipe bioconductor-holofoodr

R interface to EBI HoloFood resource

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/HoloFoodR.html

License:

Artistic-2.0 | file LICENSE

Recipe:

/bioconductor-holofoodr/meta.yaml

Utility package to facilitate integration and analysis of EBI HoloFood data in R. This package streamlines access to the resource, allowing for direct loading of data into formats optimized for downstream analytics.

package bioconductor-holofoodr

(downloads) docker_bioconductor-holofoodr

versions:

1.0.0-0

depends bioconductor-multiassayexperiment:

>=1.32.0,<1.33.0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends bioconductor-treesummarizedexperiment:

>=2.14.0,<2.15.0

depends r-base:

>=4.4,<4.5.0a0

depends r-dplyr:

depends r-httr2:

depends r-jsonlite:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-holofoodr

and update with::

   mamba update bioconductor-holofoodr

To create a new environment, run:

mamba create --name myenvname bioconductor-holofoodr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-holofoodr:<tag>

(see `bioconductor-holofoodr/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-holofoodr/README.html)