recipe bioconductor-hopach

Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)

Homepage

https://bioconductor.org/packages/3.10/bioc/html/hopach.html

License

GPL (>= 2)

Recipe

/bioconductor-hopach/meta.yaml

Links

biotools: hopach, doi: 10.1038/nmeth.3252

The HOPACH clustering algorithm builds a hierarchical tree of clusters by recursively partitioning a data set, while ordering and possibly collapsing clusters at each level. The algorithm uses the Mean/Median Split Silhouette (MSS) criteria to identify the level of the tree with maximally homogeneous clusters. It also runs the tree down to produce a final ordered list of the elements. The non-parametric bootstrap allows one to estimate the probability that each element belongs to each cluster (fuzzy clustering).

package bioconductor-hopach

(downloads) docker_bioconductor-hopach

Versions

2.46.0-0, 2.44.0-1, 2.42.0-0, 2.40.0-0, 2.38.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hopach

and update with:

conda update bioconductor-hopach

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hopach:<tag>

(see bioconductor-hopach/tags for valid values for <tag>)