recipe bioconductor-htsfilter

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/HTSFilter.html

License

Artistic-2.0

Recipe

/bioconductor-htsfilter/meta.yaml

Links

biotools: htsfilter

package bioconductor-htsfilter

(downloads) docker_bioconductor-htsfilter

Versions

1.22.1-0, 1.22.0-0, 1.20.0-0, 1.18.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-deseq

>=1.34.0,<1.35.0

Depends bioconductor-deseq2

>=1.22.0,<1.23.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-htsfilter

and update with:

conda update bioconductor-htsfilter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-htsfilter:<tag>

(see bioconductor-htsfilter/tags for valid values for <tag>)