recipe bioconductor-ibbig

Iterative Binary Biclustering of Genesets

Homepage

https://bioconductor.org/packages/3.11/bioc/html/iBBiG.html

License

Artistic-2.0

Recipe

/bioconductor-ibbig/meta.yaml

iBBiG is a bi-clustering algorithm which is optimizes for binary data analysis. We apply it to meta-gene set analysis of large numbers of gene expression datasets. The iterative algorithm extracts groups of phenotypes from multiple studies that are associated with similar gene sets. iBBiG does not require prior knowledge of the number or scale of clusters and allows discovery of clusters with diverse sizes

package bioconductor-ibbig

Versions

1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0

Depends

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-ade4

• r-base >=4.0,<4.1.0a0

• r-biclust

• r-xtable

Required By

• bioconductor-mirsm

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ibbig

and update with:

conda update bioconductor-ibbig

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ibbig:<tag>

(see bioconductor-ibbig/tags for valid values for <tag>)

Link to this page

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