- recipe bioconductor-ideal
Interactive Differential Expression AnaLysis
- Homepage
- License
MIT + file LICENSE
- Recipe
This package provides functions for an Interactive Differential Expression AnaLysis of RNA-sequencing datasets, to extract quickly and effectively information downstream the step of differential expression. A Shiny application encapsulates the whole package.
- package bioconductor-ideal¶
-
- Versions
1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.10.0-0
,1.8.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-go.db
>=3.14.0,<3.15.0
bioconductor-goseq
>=1.46.0,<1.47.0
bioconductor-gostats
>=2.60.0,<2.61.0
bioconductor-ihw
>=1.22.0,<1.23.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-pcaexplorer
>=2.20.0,<2.21.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-topgo
>=2.46.0,<2.47.0
r-base
>=4.1,<4.2.0a0
r-ggplot2
>=2.0.0
r-shiny
>=0.12.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ideal
and update with:
conda update bioconductor-ideal
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ideal:<tag>
(see bioconductor-ideal/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ideal/README.html)