recipe bioconductor-ideal

Interactive Differential Expression AnaLysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ideal.html

License

MIT + file LICENSE

Recipe

/bioconductor-ideal/meta.yaml

This package provides functions for an Interactive Differential Expression AnaLysis of RNA-sequencing datasets, to extract quickly and effectively information downstream the step of differential expression. A Shiny application encapsulates the whole package.

package bioconductor-ideal

Versions

1.10.0-0, 1.8.0-1, 1.6.0-0, 1.4.0-0, 1.2.0-0

Depends

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biocparallel >=1.20.0,<1.21.0

• bioconductor-deseq2 >=1.26.0,<1.27.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-go.db >=3.10.0,<3.11.0

• bioconductor-goseq >=1.38.0,<1.39.0

• bioconductor-gostats >=2.52.0,<2.53.0

• bioconductor-ihw >=1.14.0,<1.15.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-pcaexplorer >=2.12.0,<2.13.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• bioconductor-topgo >=2.37.0,<2.38.0

• r-base >=3.6,<3.7.0a0

• r-base64enc

• r-d3heatmap

• r-dplyr

• r-dt

• r-ggplot2 >=2.0.0

• r-ggrepel

• r-gplots

• r-knitr

• r-pheatmap

• r-rentrez

• r-rintrojs

• r-rmarkdown

• r-shiny >=0.12.0

• r-shinyace

• r-shinybs

• r-shinydashboard

• r-stringr

• r-upsetr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ideal

and update with:

conda update bioconductor-ideal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ideal:<tag>

(see bioconductor-ideal/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ideal/README.html)