recipe bioconductor-ideal

Interactive Differential Expression AnaLysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/ideal.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-ideal/meta.yaml

This package provides functions for an Interactive Differential Expression AnaLysis of RNA-sequencing datasets, to extract quickly and effectively information downstream the step of differential expression. A Shiny application encapsulates the whole package.

package bioconductor-ideal

Versions:

1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0

Depends:

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-go.db >=3.14.0,<3.15.0

• bioconductor-goseq >=1.46.0,<1.47.0

• bioconductor-gostats >=2.60.0,<2.61.0

• bioconductor-ihw >=1.22.0,<1.23.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-pcaexplorer >=2.20.0,<2.21.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-topgo >=2.46.0,<2.47.0

• r-base >=4.1,<4.2.0a0

• r-base64enc

• r-dplyr

• r-dt

• r-ggplot2 >=2.0.0

• r-ggrepel

• r-gplots

• r-heatmaply

• r-knitr

• r-pheatmap

• r-plotly

• r-rentrez

• r-rintrojs

• r-rlang

• r-rmarkdown

• r-shiny >=0.12.0

• r-shinyace

• r-shinybs

• r-shinydashboard

• r-stringr

• r-upsetr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ideal

and update with:

conda update bioconductor-ideal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ideal:<tag>

(see bioconductor-ideal/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ideal/README.html)