- recipe bioconductor-idr2d
Irreproducible Discovery Rate for Genomic Interactions Data
- Homepage:
- License:
MIT + file LICENSE
- Recipe:
A tool to measure reproducibility between genomic experiments that produce two-dimensional peaks (interactions between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original idr package, which is intended for (one-dimensional) ChIP-seq peaks.
- package bioconductor-idr2d¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.2-0
,1.0.0-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
r-base
>=4.2,<4.3.0a0
r-dplyr
>=0.7.6
r-futile.logger
>=1.4.3
r-ggplot2
>=3.1.1
r-idr
>=1.2
r-magrittr
>=1.5
r-reticulate
>=1.13
r-scales
>=1.0.0
r-stringr
>=1.3.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-idr2d
and update with:
conda update bioconductor-idr2d
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-idr2d:<tag>
(see bioconductor-idr2d/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-idr2d/README.html)