recipe bioconductor-idr2d

Irreproducible Discovery Rate for Genomic Interactions Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/idr2d.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-idr2d/meta.yaml

A tool to measure reproducibility between genomic experiments that produce two-dimensional peaks (interactions between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original idr package, which is intended for (one-dimensional) ChIP-seq peaks.

package bioconductor-idr2d

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.2-0,  1.0.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• r-base >=4.2,<4.3.0a0

• r-dplyr >=0.7.6

• r-futile.logger >=1.4.3

• r-ggplot2 >=3.1.1

• r-idr >=1.2

• r-magrittr >=1.5

• r-reticulate >=1.13

• r-scales >=1.0.0

• r-stringr >=1.3.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-idr2d

and update with:

conda update bioconductor-idr2d

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-idr2d:<tag>

(see bioconductor-idr2d/tags for valid values for <tag>)

Download stats

Link to this page

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