- recipe bioconductor-ihwpaper
Reproduce figures in IHW paper
- Homepage
https://bioconductor.org/packages/3.14/data/experiment/html/IHWpaper.html
- License
Artistic-2.0
- Recipe
This package conveniently wraps all functions needed to reproduce the figures in the IHW paper (https://www.nature.com/articles/nmeth.3885) and the data analysis in https://rss.onlinelibrary.wiley.com/doi/10.1111/rssb.12411, cf. the arXiv preprint (http://arxiv.org/abs/1701.05179). Thus it is a companion package to the Bioconductor IHW package.
- package bioconductor-ihwpaper¶
-
- Versions
1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-genefilter
>=1.76.0,<1.77.0
bioconductor-ihw
>=1.22.0,<1.23.0
bioconductor-qvalue
>=2.26.0,<2.27.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
curl
>=7.81.0,<8.0a0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ihwpaper
and update with:
conda update bioconductor-ihwpaper
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ihwpaper:<tag>
(see bioconductor-ihwpaper/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ihwpaper/README.html)