recipe bioconductor-ihwpaper

Reproduce figures in IHW paper

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/IHWpaper.html

License

Artistic-2.0

Recipe

/bioconductor-ihwpaper/meta.yaml

This package conveniently wraps all functions needed to reproduce the figures in the IHW paper (https://www.nature.com/articles/nmeth.3885) and the latest arXiv preprint available under http://arxiv.org/abs/1701.05179. Thus it is a companion package to the Bioconductor IHW package.

package bioconductor-ihwpaper

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-deseq2 >=1.28.0,<1.29.0

• bioconductor-genefilter >=1.70.0,<1.71.0

• bioconductor-ihw >=1.16.0,<1.17.0

• bioconductor-qvalue >=2.20.0,<2.21.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• curl >=7.69.1,<8.0a0

• libblas >=3.8.0,<4.0a0

• libcxx >=9.0.1

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

• r-cowplot

• r-dplyr

• r-fdrtool

• r-ggplot2

• r-rcpp

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ihwpaper

and update with:

conda update bioconductor-ihwpaper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ihwpaper:<tag>

(see bioconductor-ihwpaper/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ihwpaper/README.html)