- recipe bioconductor-iloreg
ILoReg: a tool for high-resolution cell population identification from scRNA-Seq data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ILoReg.html
- License:
GPL-3
- Recipe:
ILoReg is a tool for identification of cell populations from scRNA-seq data. In particular, ILoReg is useful for finding cell populations with subtle transcriptomic differences. The method utilizes a self-supervised learning method, called Iteratitive Clustering Projection (ICP), to find cluster probabilities, which are used in noise reduction prior to PCA and the subsequent hierarchical clustering and t-SNE steps. Additionally, functions for differential expression analysis to find gene markers for the populations and gene expression visualization are provided.
- package bioconductor-iloreg¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-iloreg
and update with:
conda update bioconductor-iloreg
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-iloreg:<tag>
(see bioconductor-iloreg/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-iloreg/README.html)