recipe bioconductor-imman

Interlog protein network reconstruction by Mapping and Mining ANalysis






Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.

package bioconductor-imman

(downloads) docker_bioconductor-imman



depends bioconductor-biostrings:


depends bioconductor-stringdb:


depends r-base:


depends r-igraph:

depends r-seqinr:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-imman

and update with::

   mamba update bioconductor-imman

To create a new environment, run:

mamba create --name myenvname bioconductor-imman

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-imman/tags`_ for valid values for ``<tag>``)

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