- recipe bioconductor-imman
Interlog protein network reconstruction by Mapping and Mining ANalysis
Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.
- package bioconductor-imman¶
- depends bioconductor-biostrings:
- depends bioconductor-stringdb:
- depends r-base:
- depends r-igraph:
- depends r-seqinr:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-imman and update with:: mamba update bioconductor-imman
To create a new environment, run:
mamba create --name myenvname bioconductor-imman
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-imman:<tag> (see `bioconductor-imman/tags`_ for valid values for ``<tag>``)