recipe bioconductor-immunogenviewer

Visualization and evaluation of protein immunogens

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/immunogenViewer.html

License:

Apache License (>= 2)

Recipe:

/bioconductor-immunogenviewer/meta.yaml

Plots protein properties and visualizes position of peptide immunogens within protein sequence. Allows evaluation of immunogens based on structural and functional annotations to infer suitability for antibody-based methods aiming to detect native proteins.

package bioconductor-immunogenviewer

(downloads) docker_bioconductor-immunogenviewer

versions:

1.0.0-0

depends bioconductor-uniprot.ws:

>=2.46.0,<2.47.0

depends r-base:

>=4.4,<4.5.0a0

depends r-ggplot2:

depends r-httr:

depends r-jsonlite:

depends r-patchwork:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-immunogenviewer

and update with::

   mamba update bioconductor-immunogenviewer

To create a new environment, run:

mamba create --name myenvname bioconductor-immunogenviewer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-immunogenviewer:<tag>

(see `bioconductor-immunogenviewer/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-immunogenviewer/README.html)