-
recipe
bioconductor-inspect
Modeling RNA synthesis, processing and degradation with RNA-seq data
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/INSPEcT.html
- License
GPL-2
- Recipe
- Links
biotools: inspect
INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or steady-state conditions, with or without the support of nascent RNA data.
-
package
bioconductor-inspect
¶ -
- Versions
1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-deseq2
>=1.30.0,<1.31.0
bioconductor-genomeinfodb
>=1.26.0,<1.27.0
bioconductor-genomicalignments
>=1.26.0,<1.27.0
bioconductor-genomicfeatures
>=1.42.0,<1.43.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-plgem
>=1.62.0,<1.63.0
bioconductor-rsamtools
>=2.6.0,<2.7.0
bioconductor-rtracklayer
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
bioconductor-txdb.mmusculus.ucsc.mm9.knowngene
>=3.2.0,<3.3.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-inspect
and update with:
conda update bioconductor-inspect
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-inspect:<tag>
(see bioconductor-inspect/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-inspect/README.html)