recipe bioconductor-inspect

INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or different conditions, with or without the support of nascent RNA data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/INSPEcT.html

License

GPL-2

Recipe

/bioconductor-inspect/meta.yaml

Links

biotools: inspect

package bioconductor-inspect

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biocparallel >=1.16.0,<1.17.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-preprocesscore >=1.44.0,<1.45.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-desolve

• r-proc

• r-rootsolve

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-inspect

and update with:

conda update bioconductor-inspect

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-inspect:<tag>

(see bioconductor-inspect/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-inspect/README.html)