recipe bioconductor-inspect

Modeling RNA synthesis, processing and degradation with RNA-seq data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/INSPEcT.html

License

GPL-2

Recipe

/bioconductor-inspect/meta.yaml

Links

biotools: inspect

INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or steady-state conditions, with or without the support of nascent RNA data.

package bioconductor-inspect

Versions

1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-deseq2 >=1.28.0,<1.29.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-plgem >=1.60.0,<1.61.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0

• r-base >=4.0,<4.1.0a0

• r-desolve

• r-gdata

• r-kernsmooth

• r-proc

• r-rootsolve

• r-shiny

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-inspect

and update with:

conda update bioconductor-inspect

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-inspect:<tag>

(see bioconductor-inspect/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-inspect/README.html)