- recipe bioconductor-intansv
Integrative analysis of structural variations
MIT + file LICENSE
This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.
- package bioconductor-intansv¶
- depends bioconductor-biocgenerics:
- depends bioconductor-genomicranges:
- depends bioconductor-ggbio:
- depends bioconductor-iranges:
- depends r-base:
- depends r-plyr:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-intansv and update with:: mamba update bioconductor-intansv
To create a new environment, run:
mamba create --name myenvname bioconductor-intansv
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-intansv:<tag> (see `bioconductor-intansv/tags`_ for valid values for ``<tag>``)