recipe bioconductor-intansv

Integrative analysis of structural variations

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/intansv.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-intansv/meta.yaml

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

package bioconductor-intansv

(downloads) docker_bioconductor-intansv

versions:
1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1, 

1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0

depends bioconductor-biocgenerics:

>=0.46.0,<0.47.0

depends bioconductor-genomicranges:

>=1.52.0,<1.53.0

depends bioconductor-ggbio:

>=1.48.0,<1.49.0

depends bioconductor-iranges:

>=2.34.0,<2.35.0

depends r-base:

>=4.3,<4.4.0a0

depends r-plyr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-intansv

and update with::

   mamba update bioconductor-intansv

To create a new environment, run:

mamba create --name myenvname bioconductor-intansv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-intansv:<tag>

(see `bioconductor-intansv/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-intansv/README.html)