recipe bioconductor-interactivecomplexheatmap

Make Interactive Complex Heatmaps

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/InteractiveComplexHeatmap.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-interactivecomplexheatmap/meta.yaml

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

package bioconductor-interactivecomplexheatmap

versions:

1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-complexheatmap:

>=2.22.0,<2.23.0

depends bioconductor-iranges:

>=2.40.0,<2.41.0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends r-base:

>=4.4,<4.5.0a0

depends r-clisymbols:

depends r-digest:

depends r-fontawesome:

depends r-getoptlong:

depends r-htmltools:

depends r-jsonlite:

depends r-kableextra:

>=1.3.1

depends r-rcolorbrewer:

depends r-shiny:

depends r-svglite:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-interactivecomplexheatmap

and update with::

   mamba update bioconductor-interactivecomplexheatmap

To create a new environment, run:

mamba create --name myenvname bioconductor-interactivecomplexheatmap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-interactivecomplexheatmap:<tag>

(see `bioconductor-interactivecomplexheatmap/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interactivecomplexheatmap/README.html)