recipe bioconductor-intercellar

InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomics

Homepage

https://bioconductor.org/packages/3.14/bioc/html/InterCellar.html

License

MIT + file LICENSE

Recipe

/bioconductor-intercellar/meta.yaml

InterCellar is implemented as an R/Bioconductor Package containing a Shiny app that allows users to interactively analyze cell-cell communication from scRNA-seq data. Starting from precomputed ligand-receptor interactions, InterCellar provides filtering options, annotations and multiple visualizations to explore clusters, genes and functions. Finally, based on functional annotation from Gene Ontology and pathway databases, InterCellar implements data-driven analyses to investigate cell-cell communication in one or multiple conditions.

package bioconductor-intercellar

Versions

2.0.0-0,  1.0.0-0

Depends

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-complexheatmap >=2.10.0,<2.11.0

• r-base >=4.1,<4.2.0a0

• r-circlize

• r-colorspace

• r-colourpicker

• r-config

• r-data.table

• r-dendextend

• r-dplyr

• r-dt

• r-factoextra

• r-fmsb

• r-fs

• r-ggplot2

• r-golem

• r-htmltools

• r-htmlwidgets

• r-igraph

• r-plotly

• r-plyr

• r-readxl

• r-rlang

• r-scales

• r-shiny

• r-shinyalert

• r-shinycssloaders

• r-shinydashboard

• r-shinyfeedback

• r-shinyfiles

• r-signal

• r-tibble

• r-tidyr

• r-umap

• r-visnetwork

• r-wordcloud2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-intercellar

and update with:

conda update bioconductor-intercellar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-intercellar:<tag>

(see bioconductor-intercellar/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-intercellar/README.html)