- recipe bioconductor-intercellar
InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomics
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/InterCellar.html
- License
MIT + file LICENSE
- Recipe
InterCellar is implemented as an R/Bioconductor Package containing a Shiny app that allows users to interactively analyze cell-cell communication from scRNA-seq data. Starting from precomputed ligand-receptor interactions, InterCellar provides filtering options, annotations and multiple visualizations to explore clusters, genes and functions. Finally, based on functional annotation from Gene Ontology and pathway databases, InterCellar implements data-driven analyses to investigate cell-cell communication in one or multiple conditions.
- package bioconductor-intercellar¶
-
- Versions
2.0.0-0
,1.0.0-0
- Depends
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-intercellar
and update with:
conda update bioconductor-intercellar
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-intercellar:<tag>
(see bioconductor-intercellar/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-intercellar/README.html)